Scaffold Ga0167653_1000445

Overview

Basic Information

• Taxon OID: 3300015162
• Scaffold ID: Ga0167653_1000445
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10376
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.900879
  • Long. (^o): 18.43474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012736	Metagenome / Metatranscriptome	278	Y
F021888	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167653_10004452	F012736	N/A	MAPAEQNNERLPRGASARQIARRLIDGRRSERTGADGEARAAAGACDSLYRELSRWVGSDGCHALFTRALVQAATEFPALSKIQLRARSEPYIDGVAETIMAHGGDATAEALEALLVRLVELLGRLIGDDMAMKLIERSMAASERGHSSSDRKREEA*
Ga0167653_10004455	F021888	GAGG	MNNYKGISADDKHKIIAALKARGAGSCPRCNDSQWTVSEFSRIDVQATMDRDTAERTTIPAIMIVCEHCGFIAQHALQPLGVWPHTADDLAHSASSHPKVSRA*