Scaffold Ga0167653_1000112

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167653_1000112

Scaffold Ga0167653_1000112

Overview

Basic Information
Taxon OID	3300015162 Open in IMG/M
Scaffold ID	Ga0167653_1000112 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	28904
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (53.12%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Storglaci?ren, Tarfala, Sweden
Coordinates	Lat. (^o)	67.900879	Long. (^o)	18.43474	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062286	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167653_100011217	F062286	N/A	MRRHIPSWAIQFGVGVALVLIAIALFAALLGAAVRGPTAFFDELGKSVARLAPQAQPDIRDDAQLKALIKAMPDGKITVGSIVEEKDQVVFTVTAPRAAVKAAVKPGDQLRIARDGSIEVVPTGIPGLLDQLQRNIDDLKKRFFGP*

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