Scaffold Ga0167653_1000040

Overview

Basic Information

• Taxon OID: 3300015162
• Scaffold ID: Ga0167653_1000040
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85030
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (41.79%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.900879
  • Long. (^o): 18.43474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026181	Metagenome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167653_10000404	F026181	GAG	VFEPASKVESISWRDLPDHLREALTGKLSGLWGAVSDEAAFDGFAADKQQALLLVISRLIAKELWQVIYKIDNVYGEGGVGIGFTGTPIILTTLRGRRDFTRFLAKHTGTSGGFYEKGRGSAVLHFIYRDGEPQKWYLHFDLYSPVHSLVSAFKHLRYERLGKVRPDWRMIQERLHAEPS