Basic Information | |
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Taxon OID | 3300015162 Open in IMG/M |
Scaffold ID | Ga0167653_1000040 Open in IMG/M |
Source Dataset Name | Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Bristol |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 85030 |
Total Scaffold Genes | 67 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (41.79%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils |
Source Dataset Sampling Location | ||||||||
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Location Name | Storglaci?ren, Tarfala, Sweden | |||||||
Coordinates | Lat. (o) | 67.900879 | Long. (o) | 18.43474 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026181 | Metagenome | 198 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0167653_10000404 | F026181 | GAG | VFEPASKVESISWRDLPDHLREALTGKLSGLWGAVSDEAAFDGFAADKQQALLLVISRLIAKELWQVIYKIDNVYGEGGVGIGFTGTPIILTTLRGRRDFTRFLAKHTGTSGGFYEKGRGSAVLHFIYRDGEPQKWYLHFDLYSPVHSLVSAFKHLRYERLGKVRPDWRMIQERLHAEPS |
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