Scaffold Ga0167623_1000545

Overview

Basic Information

• Taxon OID: 3300015161
• Scaffold ID: Ga0167623_1000545
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14624
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell Glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.156516
  • Long. (^o): -50.06387

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y
F013826	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167623_10005456	F002324	GGAGG	MGEIKLFQICYEGDLTVEVSHAMRRLGAEPNFDQSWHVWLPEGRHSAPLVRYLRQSIGDGARILVAGTQFTVTRDFLLVRHSLTPGADYSELHDAMQRLGIVAELPFESTFVVQSDDRTDVQTLGLALGELCPDDSLMVVGISHDWAYCNSGVSRMHVADDSVEMLFRSF*
Ga0167623_10005459	F013826	GAGG	MAVCWRCPRCSEVSCETDVNAAGMPLACDHCQRAMAADETQCTVCDAPNPWKRRDSLHYRCGECGNTQTFYSRAS*