Scaffold Ga0167642_1000025

Overview

Basic Information

• Taxon OID: 3300015160
• Scaffold ID: Ga0167642_1000025
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7C, Adjacent to main proglacial river, mid transect (Watson river))
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45642
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (45.45%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.082186
  • Long. (^o): -50.322297
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003572	Metagenome / Metatranscriptome	479	Y
F026136	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167642_100002514	F026136	N/A	LALFGAAVLAVPAQASAEEIPAPTLKVKAAAVPIPGFPGTGNFYGKGADVEATLEISGSGYGATAQNPKGSVPPVSGVNVYLPKGVKLHPSGFGSCAEDTLQNIGPSGCPKNSVASPLGSVLGEVTFGTERVPETATLQAFFGPGGSILFYTQGSTPVSLEVVSTGRFVRSSGKYSWELETLVPPVATVPGAPLASVSKIHLKAGAAYKSHGKVIPYGTVPKQGECPKGGFFGKTEVTFGGTFGGEREFGIPAKTVSNVIRVPCPRR*
Ga0167642_10000258	F003572	N/A	MFRPQPLTSDPAIIGGPTPIKAPRPGDTYRFKVQHGTAEKHVYVQIADALRPEAFEEPLRSGIESKGESVLAKLLERGNVPTRIKITSAGITEVGIDRRQRACAL*