Scaffold Ga0167634_1002790

Overview

Basic Information

• Taxon OID: 3300015090
• Scaffold ID: Ga0167634_1002790
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5A, Northern proglacial tributary margin, adjacent to top of river)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2269
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.15642
  • Long. (^o): -50.083651
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083841	Metagenome	112	Y
F093573	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0167634_10027902	F093573	AGG	MATMQGAVAACWINDEEVDVMLEGRKIKQTTDPVHLGFNEQRRPLLRGDASPYLIARGDQLAFAAEVVRFGFSPSDFAIEIQRVPNKASRHSQAATFAITVENIQNKRRASYLGGPGRAWIAGFLEDLIAGTFGQP*
Ga0167634_10027903	F083841	GGAGG	MSRFDQDTSTMRMRMENTLIELRKPEIGPQSKARGIMVGALLGALAWAAIITLAMAVWRWLA*