Scaffold Ga0167655_1001596

Overview

Basic Information

• Taxon OID: 3300015086
• Scaffold ID: Ga0167655_1001596
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5c, rocky medial moraine)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6060
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.901082
  • Long. (^o): 18.428257
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003513	Metagenome / Metatranscriptome	482	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167655_10015967	F003513	AGAAGG	LLFASCCLGILALSISTSTIPNQAADFTGREILSVTRIAHGGPDYAGLQNVTVQASGFVNAAAFGGLAANPLGAMAEVKLRITDYQDKQMRRRLDVAPTAALGPGPTYLVFTGSQGGGMMFGNEFRVRETAVSRHWAMMGFDTLNRAIEGSLVAVRQADDGGDYVVEVKFNADDTVRYWINKQSFLIDKITTRFRSQVLIEEQRSDYRRADCMMLPFHVITRLQGQPFADLDILSYDVKSNVPASRFTITATP*