Scaffold Ga0167655_1000086

Overview

Basic Information

• Taxon OID: 3300015086
• Scaffold ID: Ga0167655_1000086
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5c, rocky medial moraine)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30233
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (45.95%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.901082
  • Long. (^o): 18.428257
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003572	Metagenome / Metatranscriptome	479	Y
F026136	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167655_100008610	F026136	AGAAG	MRRARAICLILFGSVLLAAPAQASAEEIPAPTLKVKAAAVPIPGFPGTGNFYGKGADVEATLEIAGSGYGATPQNPKGSVPPVSAVNVYLPKGVKLHPSGFGSCAEDTLKNIGPSGCPKSSVASPLGSVLGEVTFGTERVPETATLQAFFSTGGSILFYTQGSTPVSLEVVSTGRFVRSSGKYSWELKTLVPPVATVPGAPLASVSRIHLKAGAAYRKHGKVIPYGTVPKKGECPKGGFFGKTEVTFGGSYGGEREFGIPAKTVTNVIRVPCPRR*
Ga0167655_10000865	F003572	N/A	MYRPQPLTSDPEIIGGPTPIKAPRPGDTYRFKVQHGTAEKHVYVQIADALRPEAFPEPLRSGIESKGESVLAKLLERGNVPTRIKITSAGITEVGIDRRQRACAL*