Scaffold Ga0167655_1000074

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167655_1000074

Scaffold Ga0167655_1000074

Overview

Basic Information
Taxon OID	3300015086 Open in IMG/M
Scaffold ID	Ga0167655_1000074 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5c, rocky medial moraine)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	31946
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (42.86%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Storglaci?ren, Tarfala, Sweden
Coordinates	Lat. (^o)	67.901082	Long. (^o)	18.428257	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019582	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167655_100007422	F019582	N/A	MDPTDLRAGLAARLAGDEPIDARTFNAACFMLSRALEDLQLSVPEAAPMTRRLLRVAGRIVIDTGQVGASAETWPNTEEMALLWIDEALRELGYEVQPSPEKGRRELKRAEDDWG*

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