NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167662_1003999

Scaffold Ga0167662_1003999


Overview

Basic Information
Taxon OID3300015082 Open in IMG/M
Scaffold IDGa0167662_1003999 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11c, vegetated hydrological feature)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1744
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.904687Long. (o)18.610965Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004377Metagenome / Metatranscriptome441Y
F093952Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0167662_10039991F004377AGGAMATTVSEGTIRVHRSIGGTGAAFRVAFVPYGEGDDAKPAGERAFQQLQEVRVFLKVLGIGADYIKDVLRQLTAGRSAWVPNVSISEKVLRTAGFVSIGNFA
Ga0167662_10039993F093952N/ASTKCSVREPLRRVNESVLQVLNAVTISQMCDEPQEQVLVALQA*

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