Scaffold Ga0167636_1000055

Overview

Basic Information

• Taxon OID: 3300015075
• Scaffold ID: Ga0167636_1000055
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5C, Northern proglacial tributary margin, adjacent to top of river)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23968
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soils → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.156387
  • Long. (^o): -50.083767
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083428	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167636_10000557	F083428	AGAAGG	MTEHGSRGIYELLTARIAPYTGQGETLPFDRIVRAPVDDETVGLVAQALVDADADTRRAGLFVFAGLQDDTPARLEPFRPLAGKVRDLLLDVEPEVRCDALMAFAYFDPDDLHVAVREFLTDPNGRNRLQAVRILDIECSPKNLPTLLTLGVDPYHEGAEDVADAREWLVVREAARAAVEHTVDVRFPAPLEEEEVEGVRCVYHAWDPVWQWAAREGIRGRG*