Scaffold Ga0167633_105436

Overview

Basic Information

• Taxon OID: 3300015069
• Scaffold ID: Ga0167633_105436
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4C, Ice margin, adjacent to proglacial lake
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2043
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.156843
  • Long. (^o): -50.082361
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013685	Metagenome	269	Y
F042555	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167633_1054361	F042555	GAG	MKLKRLLSLVLLLGTLVLPALAQAQTPSPTPASSPVRTLSDNIARLSQRAGSLLPYFDNEIVSKLIGWFELLAWVAGNCLAGFAMLRIVREDNGEGGNLYWWFGRLALFFMLSGASLAIINGMSGIGHEIANGNETGQRSVLQNLYLAQRESFNDSYAKFQQNMFTVKVDGRETAIEPVPIGSESVLGIIVDNESTIQDFDRKADVSQWNISTMMTWLNFERALIEFGDLILVILGAAITLGMKLAMPFMLAGIVDK
Ga0167633_1054362	F013685	AGGA	MKNGMKHVLLGMLLGVTLMPSTAQAQFTVFDPAQYSLQIERQIEEANRWLERVRQYSEEINKLAEQLSTMKGVLAQADKLVLHNVNLTRTMAQIGQTVRDVFALKRAIETMVISRLRMIKSIKTRLMGGIFDPQADLRDFEEYLRDSIGRTEQDKIATMNRIAMFDATLARLYHDLQTAEAKQAGAALEMKQAKDKLDGELAKPQTEQCATCISDLKLEIATCEKMIADLDTQITNLSTQIEDRVKLYNLTMEERVRIANRVKATDEAWDQLSIVKDSIFSAIERGGVPSPSPQPTP*