Scaffold Ga0167649_100928

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167649_100928

Scaffold Ga0167649_100928

Overview

Basic Information
Taxon OID	3300015063 Open in IMG/M
Scaffold ID	Ga0167649_100928 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3b, vegetated patch on medial moraine)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4067
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Storglaci?ren, Tarfala, Sweden
Coordinates	Lat. (^o)	67.900853	Long. (^o)	18.44175	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055045	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167649_1009282	F055045	AGG	MKMAFLVLMTIGLMSAQSDDAAFRKWWPRFQAAVAKHDVKAVARGMRFPQPWENGPAVREIKSEADLTARFNVFFTREIKRQIATKRPERLPNGNYMIVWHARGNEYSLHFKPAGDGFALDGLGEGPP*

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