Scaffold Ga0167649_100096

Overview

Basic Information

• Taxon OID: 3300015063
• Scaffold ID: Ga0167649_100096
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3b, vegetated patch on medial moraine)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16261
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.900853
  • Long. (^o): 18.44175
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006285	Metagenome / Metatranscriptome	377	Y
F042399	Metagenome / Metatranscriptome	158	N
F090549	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167649_10009611	F042399	N/A	MRTVSADRASIDYWQDYGNGRQVLKSHFGIRVWHDRCCAITNVAAEIPSLFGEPHAIPVDLSAGAGQHSLSNVVSEHMNHHPESDLIAVLTGKKAFHEALG*
Ga0167649_10009612	F006285	N/A	MAKVHEYILVAVDGTCGVTKSNGPICFQQSRQEVGGHFEVYDPQLGDGYTAQVNEDGRRFKANALFDDVAGNVLIGRTHGAEMWGLSVEQRAEVLTLLKTKR*
Ga0167649_1000965	F090549	GGA	MKSLAYIALVLSVLMVAASLDAVPDPPAINLHSFDLKTVGLEVPDISPELRLHGVAPYLAPFVPLRSVDCIEAVKSTRPSDQIARANIAGDPSPPVSI*