Scaffold Ga0181338_1001707

Overview

Basic Information

• Taxon OID: 3300015050
• Scaffold ID: Ga0181338_1001707
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3938
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046202	Metagenome	151	Y
F078231	Metagenome	116	Y
F093271	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181338_100170710	F046202	AGGAG	MFDSFGDFFWTFMAMSGFMFWVCVAVFVVLVIRRIRIKKGRVFYE*
Ga0181338_10017074	F093271	GGTGG	MSSKKARGKMNIVTAVSFDTLSQCGLKIAIAHTVGSTVTVTSLGSITKDGMNFIPSRALRKMLETNGQRATEEIKESGNE*
Ga0181338_10017078	F078231	AGAAGG	MNVEPDLIDIYAMFALMGLMQKPIKAGKTKIDIAYEAFEQAQTMIDVRKDFIKEGGG*