NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181338_1000437

Scaffold Ga0181338_1000437


Overview

Basic Information
Taxon OID3300015050 Open in IMG/M
Scaffold IDGa0181338_1000437 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8213
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023295Metagenome / Metatranscriptome210Y
F035672Metagenome / Metatranscriptome171Y
F048257Metagenome148N
F063343Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0181338_100043710F023295N/AMTRVILVPEGQPVMLAEPVKAKVYAFDPNGKLVPSSNKVVLPAGWYALPRK*
Ga0181338_100043711F063343N/AMNYLILLGIMSLFIFGQKTRTNWVSGIKSTLTKMMTPGADRRLFSGFTASPIGWIRNAVSWVRAFNWTGVAAGINGLGGVGGGTLITRKHVLFAQHVPYPERPFDIFFTNKDSRTFSYKVTAIQQVAGTDIAIGTLDRDADPSLNVYRVLPDNWLQYIANKTETLTTFGITFKETKTTLPILYVDSEKKVSTADLTEVRMNKATVTPPSFEAARAWTEALVVGDSGNPIFVMLGSELVLLGAWYTGTDAGVVGTFPWLIDYKAQIESITGTKLQIADLSGLDRIA*
Ga0181338_100043712F048257GGAMTPFPSSVAARKCLQGEGCSETVYWVLRRTLLINTGLRLAGEKKDLWKKSFYGSLAVQAFVMAWTASHMDEEKASLPSGETALSGNAFEILGTYLTRSAIVGTGLWLGGERKNLIRNTLASTAMIQAAVLLWAKDQE
Ga0181338_10004378F035672N/AMNFHDTLRDLGIGVGGPAGGLLVASIVPDPIMANLSVTLGSLAALTVIIKNVIDIWKNNQK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.