Scaffold Ga0181338_1000437

Overview

Basic Information

• Taxon OID: 3300015050
• Scaffold ID: Ga0181338_1000437
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8213
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023295	Metagenome / Metatranscriptome	210	Y
F035672	Metagenome / Metatranscriptome	171	Y
F048257	Metagenome	148	N
F063343	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181338_100043710	F023295	N/A	MTRVILVPEGQPVMLAEPVKAKVYAFDPNGKLVPSSNKVVLPAGWYALPRK*
Ga0181338_100043711	F063343	N/A	MNYLILLGIMSLFIFGQKTRTNWVSGIKSTLTKMMTPGADRRLFSGFTASPIGWIRNAVSWVRAFNWTGVAAGINGLGGVGGGTLITRKHVLFAQHVPYPERPFDIFFTNKDSRTFSYKVTAIQQVAGTDIAIGTLDRDADPSLNVYRVLPDNWLQYIANKTETLTTFGITFKETKTTLPILYVDSEKKVSTADLTEVRMNKATVTPPSFEAARAWTEALVVGDSGNPIFVMLGSELVLLGAWYTGTDAGVVGTFPWLIDYKAQIESITGTKLQIADLSGLDRIA*
Ga0181338_100043712	F048257	GGA	MTPFPSSVAARKCLQGEGCSETVYWVLRRTLLINTGLRLAGEKKDLWKKSFYGSLAVQAFVMAWTASHMDEEKASLPSGETALSGNAFEILGTYLTRSAIVGTGLWLGGERKNLIRNTLASTAMIQAAVLLWAKDQE
Ga0181338_10004378	F035672	N/A	MNFHDTLRDLGIGVGGPAGGLLVASIVPDPIMANLSVTLGSLAALTVIIKNVIDIWKNNQK*