Basic Information | |
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Taxon OID | 3300015050 Open in IMG/M |
Scaffold ID | Ga0181338_1000437 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8213 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (33.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F023295 | Metagenome / Metatranscriptome | 210 | Y |
F035672 | Metagenome / Metatranscriptome | 171 | Y |
F048257 | Metagenome | 148 | N |
F063343 | Metagenome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181338_100043710 | F023295 | N/A | MTRVILVPEGQPVMLAEPVKAKVYAFDPNGKLVPSSNKVVLPAGWYALPRK* |
Ga0181338_100043711 | F063343 | N/A | MNYLILLGIMSLFIFGQKTRTNWVSGIKSTLTKMMTPGADRRLFSGFTASPIGWIRNAVSWVRAFNWTGVAAGINGLGGVGGGTLITRKHVLFAQHVPYPERPFDIFFTNKDSRTFSYKVTAIQQVAGTDIAIGTLDRDADPSLNVYRVLPDNWLQYIANKTETLTTFGITFKETKTTLPILYVDSEKKVSTADLTEVRMNKATVTPPSFEAARAWTEALVVGDSGNPIFVMLGSELVLLGAWYTGTDAGVVGTFPWLIDYKAQIESITGTKLQIADLSGLDRIA* |
Ga0181338_100043712 | F048257 | GGA | MTPFPSSVAARKCLQGEGCSETVYWVLRRTLLINTGLRLAGEKKDLWKKSFYGSLAVQAFVMAWTASHMDEEKASLPSGETALSGNAFEILGTYLTRSAIVGTGLWLGGERKNLIRNTLASTAMIQAAVLLWAKDQE |
Ga0181338_10004378 | F035672 | N/A | MNFHDTLRDLGIGVGGPAGGLLVASIVPDPIMANLSVTLGSLAALTVIIKNVIDIWKNNQK* |
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