Scaffold Ga0181338_1000068

Overview

Basic Information

• Taxon OID: 3300015050
• Scaffold ID: Ga0181338_1000068
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26919
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (21.88%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F017989	Metagenome	237	Y
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F040160	Metagenome	162	N
F058252	Metagenome	135	N
F097170	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181338_100006812	F017989	N/A	MALTQPCFTDLTSDFQNYNIYKATNQIAGFDIPQYDKIDITYYGSTNNIATVQYSNGGSVVATLTLVYSTQPPTVNDTNLVNITIAYP*
Ga0181338_100006825	F097170	N/A	MPAEGSVFDGFTSVIAQDAATHPSYLPEMYVAESVNRTFRGGINRTRPSIRNINIVAGTGQSETIVNDIQTGNFQGAYPYRRTTYESADGIVISVAGVIYFLKMVNNVAYAYKLPVADGWTWNDGSLMHTFFVQAEDQLYIQNGYQNPIAWNGDLNTNAVRLNPFNREMPIGTIMEYAFGRVFVSDRFNQIYASDIIFGAGFTDTTNTRRFTEITYWELGGAFSTPSMMGNITGMKVMPELGLNLRGQGQLVVLTGNGAFAMDVSIPRAQWNTTNIQRISLLGRGCTSPYLGLVNSELWFRSHDGWAFYSNTQSEFNRYFSLRKLSREVNKWVERDTPWLRQFASTMFFDNYLLSTVAPEIKRTSAPGLHRYHRGIIALDLDQSASPSPDAQLSFRWNGLWTGIRPTQMLSALIAGQKRGFAFSFDKDNRNRLYEMTSEQTDDFGPDGTRQIESCFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVESSVEFRADSNPCWSELKVPTTFGCNPCSPVVTECVPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKINLIGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWEYNIVN*
Ga0181338_100006828	F014513	N/A	MGDTLEEMVELVKGFVGDSSTCSYERGVKAVNQARRLLWNKRAWTSQEEYVQICCVNNCFALPNRYEQIKLAWIGDDSASLADEWFNATNAFALKADHSCHRLITEVGGLHVLFRDYTAHPYQLGIIAEDIEDAGTELMFEVQDQYDTYHKVNLFAAQSPNLSKTDLLIKGVRSVSKPVTKGRIRVYAYDMELQARTLIAIYQPNDSNPTFRRFKAPKTCECITLYASKKYFDLTDPKELVEFIPDAMIYAILALNSRENRKAQEFLANLALAVQEQEKEMVGIEIPTAAPIRFANYSRADNLIGSDLLSPSPNDYFLSR*
Ga0181338_10000683	F058252	GGA	MTTNNTFESLIICEGIEVSESPTKILFRQRYNQCWVNKSDIRVKETLGFLDGEKMIRIVVPEEVANTLELEGILD*
Ga0181338_10000684	F023326	N/A	MSRVFSSSKGIRRYGIQFPENMDDLGIELYCYAISRGEYGKDYCIKQNINLSDFKLLLPHEHFINAVKLQWPTEVSIVNGKYTNIQLLRTLEELCNNQDICLAGAASMGKSFPVGLWIYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLYKCARVQIGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITAKVNLSANNDITFIGIGNPSAGDNPHTRWAIPKDQSNFDSVSPNMDKWETGTGVCLFYNGMRSPNFAAPAHEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTNEEPLWDSEGFTKVAGFDTAFTIGGDRCVLTIAKLGFVRGTRNRVMWLESQKVIQLSANAAAEFEIQLATEVVSLCRAAGVQPSKFGMDVSGDGGRVGQAIIREWLRFDSMGAAIALISSMGKPTERIAAEVDKRPCKDVYDRLVSEYYYSAYHAFKSRVIFGIDPASDLARELCLRRYTIKSKKIAIETKDELKGRTGYSPDLSDSLIYALEMARRNGLVFIGNDKPVPTNRFWARDEVSIDTTQDDDYGSDDNGDW*
Ga0181338_10000685	F021128	N/A	MKGKMKLKNKNLAPVGGWYFKYEIKRNNLTFPAVVYGSTCSSLIQNIQKDYRSNGVELPSNIEQMVEDQICQRQPSERCWYSDGLGDRIAQAIHTVAAATDKVLGTQLEHKARGCSSCNKRRNALNSLS*
Ga0181338_10000687	F040160	N/A	MTTEKVKSLCAAITSHEDWNKLQAYLLLNVNPPDGVTTLIHAIKTIEAIGTEEQGEFKKTKATRKHEEPADSTIDPDLDEG*
Ga0181338_10000689	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCTPFRAITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGAGHKWMGITTDDGTYCGLVDDQAWFVPEHTINNEAGYDLCAIRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNADTAFNAGLATFNEADPATWARLVRVPRYIKTVLENGCAYVPNKAYRNADFGISVAMVNKAMCKWTMPSSTGYSQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHTFLHRMPKSKNLYGSCCPVQSYIVPENNQDCYSCAGVGDIVVPS*