Basic Information | |
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Taxon OID | 3300014969 Open in IMG/M |
Scaffold ID | Ga0157376_10000002 Open in IMG/M |
Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 684532 |
Total Scaffold Genes | 637 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 351 (55.10%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004159 | Metagenome / Metatranscriptome | 450 | Y |
F009860 | Metagenome / Metatranscriptome | 312 | Y |
F010196 | Metagenome / Metatranscriptome | 307 | Y |
F043999 | Metagenome / Metatranscriptome | 155 | Y |
F101403 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157376_1000000221 | F043999 | N/A | MEKPVRRILLPGVSDAGAPPPVVIDSRVVVARARRRAIVRDVIDLLLLVCVDGLFLRWPHAHVPFLDRYDSLMVLLGLNAMLVGYVWLARALPRWTARRVASTWCLAERTRFFRSTAR* |
Ga0157376_10000002294 | F010196 | AGG | LIVGIIVMGIAVPATIFFLLGLHTPSQFFTVAAITFLAWGLADLLASILERPRLENRSPGMAIKEDLERRRDQ* |
Ga0157376_10000002426 | F004159 | AGGAG | MATTRDDHERAAAGMDYDFPIREKASQLGNALADNGPEALFEEIENLLPESWREHIRTFPIAAMVLGAGVGVWLGMRKGDEVIAAGTAMITSAAMQNVASVMQHATGRGDSD* |
Ga0157376_10000002486 | F101403 | AGG | VSWLASLPHQIPFRAASAATRIDDKTIEGLYVCTADDLMPPNVMAVEAMAQLGGGLAFTSQAFLTGIDGCEVDRAIEAGDVIRFVVTLDANFGGTFRFSGSGAIDGVEVIRGRFYLASPDA* |
Ga0157376_10000002543 | F009860 | N/A | MPTSIRQIEFLARSIVNRLEDRGLVEFGDAEIGIDVVTKTLEDNFAAYDAIEAEARIRLTKSIGTREPSEVEVTEAMKRVAAERNVTL* |
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