Scaffold Ga0134315_1014222

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134315_1014222

Scaffold Ga0134315_1014222

Overview

Basic Information
Taxon OID	3300014962 Open in IMG/M
Scaffold ID	Ga0134315_1014222 Open in IMG/M
Source Dataset Name	Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1250
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location Name	Bangladesh: Bara Haldia, Matlab upazilla
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F058142	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_10142221	F002260	N/A	AERRAAALDVNWDPYFKVASQEWLYKLEFGWWQKYCDTVLGAYYYSNLPNGQLISSFNPSQLIKNDQTLIRLDTFGAVLVFYESLVTDVSNMNEVDVQNYEFAKKRCDSEWTKALELMNFYDLYQDSPQGPTTKLEENWTADVDYFNGDRRYF*
Ga0134315_10142222	F058142	AGGAG	MAEVTYSVLNEPTVTQSQIEAVLRRDIPKAWNIPIYDDFPSDSEVVRYGIYVSDVHTVERNPHQLSVQYCGAIYHAFDEFGVTYISYQDDPYNVAVNAIIANLVTAVMDDGVQLMDGYFERNFDQVRTYGPTQAEKHTWTFRLTRMEFNT*

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