Scaffold Ga0134315_1002143

Overview

Basic Information

• Taxon OID: 3300014962
• Scaffold ID: Ga0134315_1002143
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3630
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066470	Metagenome	126	Y
F075715	Metagenome	118	N
F075748	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_100214310	F075715	GAGG	MNKEYLIAKADLCKDLAIEQLTNGDNENGVKNLKRMIRALEEINLINYLEERRGRE*
Ga0134315_100214312	F066470	GGAGG	MTDLDRRIASAKRSAVGYRNYRRARERALRRLSNAYPETYKELLEQEKIVDEQLGKKWLDIDGSTDATDGLYTDPASADPRGSEEASASADEGNYGGEA*
Ga0134315_10021436	F075748	GAGG	MLSKREILEIIDSTASFNAYIEGMDTLSGQSLDLITQVAGVDGEEWTDEECLEIVKEIVDMTNAYRNTHDWED*