Scaffold Ga0134315

Basic Information
Taxon OID	3300014962 Open in IMG/M
Scaffold ID	Ga0134315_1000201 Open in IMG/M
Source Dataset Name	Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014962 Open in IMG/M

Scaffold ID

Ga0134315_1000201 Open in IMG/M

Source Dataset Name

Surface water microbial communities from Bangladesh - BaraHaldiaSW0309

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Tennessee

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15896
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

15896

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location Name	Bangladesh: Bara Haldia, Matlab upazilla
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Bangladesh: Bara Haldia, Matlab upazilla

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F025268	Metagenome / Metatranscriptome	202	N
F056542	Metagenome / Metatranscriptome	137	Y
F070018	Metagenome / Metatranscriptome	123	Y
F097170	Metagenome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_100020114	F070018	GGA	MKTYGVIYADGRKELVSIVLDDEGNPRSDTLAPYPTPEDWVTPTIVPLIKIDKPDTGEWNPKVVWFEDRVERQWGAA*
Ga0134315_100020118	F025268	N/A	MSQIFFNSCEEIDSFFREGREYFNDLYVKKLVTNSTYFTRFEEQAWPLNHTTEQKAFRFGRGFYDPCTPFQKINDTYCNTDSCATNSEVIQRPGTESYTFELLRKEMHTEWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRANYIGGAGHKWLGVVNDDGTYCGLLDDQSWFIPEHEGGNNSGYDLCSVRVKVAAADLNKIAYLSLDMLDDALVELQNEDDAFRLDLTEATGMPLLDIVIPDPRVGRGLYFQAKRNNGYWDANTDFDSRLTSLKLGINRIIGDYAFGYDINSVRFNADTAFNATLPPFDANDSSTWPKLIRVPRYTKVVLENGCSYVPNKDYQNADFAISVAMVNKAMTKWVMPSATGYGQAQQMTQNYAGDWEWKNPDWECNRWRKMGYYQAQFRLGAQVKDPTLIHVFLHRMPKARNLYGSCCPLNEYTPSPEPADCYNCEGVGDIQGA*
Ga0134315_10002012	F056542	N/A	MKPLQGTEPKLMSGGASSRGMIREGMGNKPNLGAKSPSLYSSKPLPTVGKPVTTFGGPR*
Ga0134315_10002014	F097170	GAG	MPAEGSVFDGFQSVVAQDADTHPSYLPEFFVAESVNRTFRGGINRTRPAIQNIKILPGKGQQDSIVNDIEVGNFQGAYPYRKVTNEATGDGIIISVAGKIYFLNIIGNVAYAYALTLDPTGAQYWNDSSLMHTWFVQAEDRVYIQNGYQYALAWDGNVNTPLRRLLPGKSQMPIGTIMEYAFGRVFVSDKFNNIYASDIIFGNGFTDTSNTENFTEITYWAEGGAFATPAGMGNITAMKVMPYIGGNLRGQGELVVLTGNGAFSMDVSIPRALWNTSNIQRISMLGRGCTSPYVALVNSELWFRSHDGWAFYSNSQSEFGRFFSLRKLSREVNKWVDLDTKWLRQFASTMYHNNYLVCTVSPQTKKNAAQGLHRYHRGMVVLDLDQTASPSPDANLTFRWNGIWTGFRPTQLLSALIEGEKRGFGFSFDPDEKNRLYEITDNYGDDYGPNGTSKIQSFVTTGRYDFFRTQSTNKFLRKKLTGGEMWLSDIPGDVTSSVEYRADSNPCWSELKIPTTFGCPPCSPVLISDCTPRRGGKQYKRYKFTTPDPSECNNIAGIPAVEGSEFQLKINLTGTATVDRVRIMANIKNNDDSPVGDCPEDDQECTEICCPERYWDYSIYGTQNN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0134315_1000201

Overview

Ecosystem & Geography

Associated Families

Sequences