Scaffold Ga0134316_1005882

Overview

Basic Information

• Taxon OID: 3300014960
• Scaffold ID: Ga0134316_1005882
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0709
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1294
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F006264	Metagenome / Metatranscriptome	377	Y
F027490	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134316_10058822	F027490	GAGG	MSAYGKVISGGARMTKGVTKGINDKLKSFADGHKRSEGIAVQVRDIYKVNTLSDQHTQNINGGKFQKGTRPSKV*
Ga0134316_10058823	F001059	AGGA	MATYDIEALKSDLPSAKELAQFVYDKTGIALDLVGKPKEEQYLAAKNALEGKKVPAEFLTNENPYVQKSDLIPKDEIPALPPRSEDLPPMSNMIHQFGATNMPHPMDPQSDRKVQIMFRKYDNNLITYQVLGPMHYVEEGVRINKYGQEVPERYRLVDPRTAESVLRNPDGTFSERGRGLYTYLTGEKGASVWTLIDRDLTAASGKNIADPWA*
Ga0134316_10058824	F006264	N/A	MEDFSVVFRKKLSDQAEACARKTLERLQKDLQGPQKLNPDEIFYLSKAADILLAIRDEYGAK*