Scaffold Ga0180300_10184742

Overview

Basic Information

• Taxon OID: 3300014886
• Scaffold ID: Ga0180300_10184742
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay15, Core 4569-2, 21-24 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 765
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0154
  • Long. (^o): -111.3798
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073072	Metagenome	120	Y
F098235	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180300_101847421	F073072	GGAGG	MKKIALITVWLVDDPEAYEGKTNSDVEKEILEDIGSIPYAARIEKITVLDYPDCNA*
Ga0180300_101847422	F098235	N/A	MTIYEEALNLVRKGYRNLSIPEQLFIELQQFVERSKGRYVSVAEVVREAIREFLEKHKQT