NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180080_1082855

Scaffold Ga0180080_1082855


Overview

Basic Information
Taxon OID3300014870 Open in IMG/M
Scaffold IDGa0180080_1082855 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT560_16_10D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)561
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9511Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028531Metagenome191Y
F079182Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0180080_10828551F079182N/AIPVSALGALGRDLPLWIRLEYRVLDGDSTSAPEDSGYTLQALIDALSRRRKTESSPYTIEAGPFRLRSRGSPTPR*
Ga0180080_10828552F028531N/AMNRLRNRLIAAFLASTLLPLCATVWITTSLLDRSLRYSTTGELDRLSRTLETTAKQLYQRERDALKQDALAGRTRPTMYATATAAEWPEPVRSFWESGEPEGFGVSGVSGER

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