NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182027_10569535

Scaffold Ga0182027_10569535


Overview

Basic Information
Taxon OID3300014839 Open in IMG/M
Scaffold IDGa0182027_10569535 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1223
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006594Metagenome / Metatranscriptome369Y
F012405Metagenome / Metatranscriptome281Y
F062993Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0182027_105695352F012405GAGGMARNREVLNRILRRGEDAGLLVSTAALMLVEVGYVAWLERLPALPIPAHPAGFIDLPPWYERPRVEVTLLLTVLGGLIAWAAWGVFDFMRNRPDATVATTHRAMVGKRLKTAVFYAVVAGADMLLIQFLRT*
Ga0182027_105695353F006594N/AMEQNAEITAESVLHMVRSRMSPEIPPEAAGIQSTSATRIVETFRARFAKACDAGVRKRLSNAVLEPANPLDAKARRRLRQEAVVLGTLVFAALGLAVYFNLNAMAR*
Ga0182027_105695354F062993N/AGVFTLRSPRSSCSLYTLSQSQLIGDGIRITSKGQAPVKVLNAEVHANAVAPGGTTWGLVAFEWPPQANGPAVVRFAFAPDGAGEVTAVLVL*
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