Scaffold Ga0182030_10292474

Overview

Basic Information

• Taxon OID: 3300014838
• Scaffold ID: Ga0182030_10292474
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1805
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005822	Metagenome / Metatranscriptome	389	Y
F011771	Metagenome / Metatranscriptome	287	Y
F014867	Metagenome	259	Y
F072644	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182030_102924742	F011771	AGGAGG	MDPKAKQDGENSSASGPARFCGLDQLDWLMIVMAVLLGTVAKRYHFLALPDHFLEWILPFLLMVAGYRARRKVTELIESRRAKAKRPWSK*
Ga0182030_102924743	F014867	GAGG	MRLLFPYSYDRADLLMSAGCCTFVSAALIVVIPRLGILLLELLLGLFFIGCAVVARKRLRRQARAKDGSDKAKDARIGRLNRYDVFLILAVILIQTSAAGSLRRAGLSEGTVGILPLFLFAASILLKPRAVEFMEARRKNKQEGRGSINAVGLDSAGAAPVPSGEARAQAVVRAAGKNGDLE*
Ga0182030_102924744	F005822	GGAG	MKSSEQSMGVTGTESIADSKSTQPPAGEGKRARAVRGSQATPPRSAATRRRRIRHDNSETTGEERFFLASGSGNGDVPALGRECGSEAEAIIDAFRERVNFYTVSEFQARADVGPSGEPILRKDGLKKNNPAS*
Ga0182030_102924745	F072644	N/A	MRETSVSLKHPDFLGFCCSVRGSATSLAVKKEKLMSERNQVVVVLIVALLLGAFVDRSTALKIVAGVALLWTLQNQPTVFECIRKLFSLR