Scaffold Ga0182030_10062137

Overview

Basic Information

• Taxon OID: 3300014838
• Scaffold ID: Ga0182030_10062137
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5699
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F029198	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182030_100621372	F004823	AGGAG	MYATKAVNGVPAIQRDGQIVLSVCDQDWEFADWLCALLNELGCKSGLLLNRHDRDWLKATDSPFRRTVHHA*
Ga0182030_100621374	F029198	AGGA	MDSMANSRAVRAGGEVIVLHCWACGTAHCVNQESCVPGGLPHMVCSNSSCRMSMFLVNELVLDDKTRKQMTNSELNARVTTSRFWR*
Ga0182030_100621376	F006278	GGAGG	MFRAEIQWLASGPTLKLEGRLVADWAEQAQHLITKDVLPKGLIVDLTEVSYVDPVGEQMLKWLASTGAMFAPGSVYGFAICDRLRLPPARSIAGRRKRHRNKAERPTVSHSPSIEAI*
Ga0182030_100621377	F001596	AGGAGG	MSWFQSNTAPVDARRHASPAEVVACFQDQKHVLLRLAFLITGDQATADQAVVEACKTTLRGNSPFRDWLLEWAKAATMASAIAHATEAIRICEAAHTSQRCPHIEHLSQGDAEERAASLGLILVVDTQELLTQLDPLCRAVLILRVAIRSSIQDCALRLNVSRAAVLAANCQALTWLQKRRVQLVEENRDVSQTV*