Scaffold Ga0182030_10058079

Overview

Basic Information

• Taxon OID: 3300014838
• Scaffold ID: Ga0182030_10058079
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5994
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047459	Metagenome	149	Y
F078152	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182030_100580792	F047459	N/A	MRISLNNVWLTNDGVADLQSWTDGHDVLLNGRQMVQDAQFLRALAAQPLARGNAVNVLQFTVTRQHVSVAEAAAYVLTAFSSLPGSGTATIVCGASGEIPLTCTFSAVLAEMPKSTFRGTRSDTTFVLRGGLITMGAPLAANGVDGDSFETVYGYPQGGTVDGGNLADALVPVALNLDGGAFV*
Ga0182030_100580796	F078152	N/A	MKLTYLSETFFPFLVPEMDSSFASSVGPQTVYPAGFSLDQALQIYWRAQNYQLTASGNGVLGALTQALSIDGLLPPRNAGVGTNTYYEIDGFTPVGPGDLVTGYGMRVVVPGTGTITASGSGISGTNTSALFNLQVNLFYPEIFAPDPVIKYDGQWWPAMSVSCAVTNTVTLSSGGTLSIGYDCTTFDPASTTEIGSFSFFGVSVPVYCTALAPAEGSEPAEMRTFSGSLTVANEFA*