Basic Information | |
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Taxon OID | 3300014819 Open in IMG/M |
Scaffold ID | Ga0119954_1036556 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 893 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F036564 | Metagenome / Metatranscriptome | 169 | N |
F044916 | Metagenome / Metatranscriptome | 153 | Y |
F064403 | Metagenome / Metatranscriptome | 128 | N |
Protein ID | Family | RBS | Sequence |
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Ga0119954_10365561 | F044916 | N/A | MGRRKVEKSRIEKGLKKEEKTFSIMAKKIVDSIKDEKELRAFAKTSLEILYKDNANLFTDHAKL |
Ga0119954_10365562 | F064403 | AGG | MINPRAKILSDLKRAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF* |
Ga0119954_10365563 | F036564 | AGGAG | MKLGRVCLDINYIVDMDNQEMVQRATECLYEDLMQGVKYGDISNWIDVIEDKNAKEDMIPEFLLKKEND* |
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