NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119954_1036556

Scaffold Ga0119954_1036556


Overview

Basic Information
Taxon OID3300014819 Open in IMG/M
Scaffold IDGa0119954_1036556 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)893
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036564Metagenome / Metatranscriptome169N
F044916Metagenome / Metatranscriptome153Y
F064403Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0119954_10365561F044916N/AMGRRKVEKSRIEKGLKKEEKTFSIMAKKIVDSIKDEKELRAFAKTSLEILYKDNANLFTDHAKL
Ga0119954_10365562F064403AGGMINPRAKILSDLKRAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF*
Ga0119954_10365563F036564AGGAGMKLGRVCLDINYIVDMDNQEMVQRATECLYEDLMQGVKYGDISNWIDVIEDKNAKEDMIPEFLLKKEND*

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