Scaffold Ga0119954_1036556

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1036556
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 893
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F064403	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_10365561	F044916	N/A	MGRRKVEKSRIEKGLKKEEKTFSIMAKKIVDSIKDEKELRAFAKTSLEILYKDNANLFTDHAKL
Ga0119954_10365562	F064403	AGG	MINPRAKILSDLKRAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF*
Ga0119954_10365563	F036564	AGGAG	MKLGRVCLDINYIVDMDNQEMVQRATECLYEDLMQGVKYGDISNWIDVIEDKNAKEDMIPEFLLKKEND*