Scaffold Ga0119954_1018089

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1018089
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1453
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023295	Metagenome / Metatranscriptome	210	Y
F048257	Metagenome	148	N
F063343	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_10180891	F023295	N/A	ISRRSLVLLSIVQGLVGCSGTKVILVPEGQPVMLAEPVRAKVYAFDPNGKLVPSSNKVVLPAGWYALPRK*
Ga0119954_10180892	F063343	N/A	MNYLILLGIMSLFIFGQKTRTNWVSGIKSTLTKMMTPGADRRLFSGFTASPIGWIRNVVSWVRAFNWTGVAAGINGLGGVGGGTLITRKHVLFAQHVPYPERPFDIFFVNKDSRTFSYKVTAIQQVAGTDIAIGTLDRDADPSLNVYRVLPDNWLQYIANKTETLTTFGITFKETKMTLPILYVDSEKKVSTADLTEVRMNKATVTPPSFEPARAWTEALVVGDSGNPIFVMLGSELVLLGAWYAGTDAGVVGTFPWLIDYKAQIESITGTKLQIADLSGLDRIA*
Ga0119954_10180893	F048257	GGA	MIDFPSSVAARKCLKGEGCGDTVYWVLRRMLLINSGLRLAGEKEKLWKKSLYGSLAVQGFVFAWTAAHLDEPAASLPSGEVAVAGDAVGILGTYLTRSAIVGTGLWLSGDRKHLLRNTLVSTAMIQATV