Scaffold Ga0119954_1001340

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1001340
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8180
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (20.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005727	Metagenome / Metatranscriptome	392	Y
F015704	Metagenome / Metatranscriptome	252	Y
F034907	Metagenome / Metatranscriptome	173	Y
F037598	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_100134016	F005727	N/A	MIRSLTRSRSPEFHRATMLRLTVGALLLWLLWEPIRPVRVVTADALSTAADLIAR*
Ga0119954_100134022	F037598	N/A	MTVRTNVLPLDLCTVTLTEAQWSTIRTALLCLACDCRVAGKGSDADYYLNAYNNLKAAMGME*
Ga0119954_100134024	F015704	N/A	MTFSTFPELLESCTDPSNGTIRWGTACQAAKDHGLWDDFRTDYGTTARFGPVDAGEFLSWLGY*
Ga0119954_10013409	F034907	N/A	MITAILGGVILTTFSILFYLEDREGGGLYDPDPSASFRHRNRNK*