Basic Information | |
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Taxon OID | 3300014819 Open in IMG/M |
Scaffold ID | Ga0119954_1001340 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8180 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (20.69%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005727 | Metagenome / Metatranscriptome | 392 | Y |
F015704 | Metagenome / Metatranscriptome | 252 | Y |
F034907 | Metagenome / Metatranscriptome | 173 | Y |
F037598 | Metagenome / Metatranscriptome | 167 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0119954_100134016 | F005727 | N/A | MIRSLTRSRSPEFHRATMLRLTVGALLLWLLWEPIRPVRVVTADALSTAADLIAR* |
Ga0119954_100134022 | F037598 | N/A | MTVRTNVLPLDLCTVTLTEAQWSTIRTALLCLACDCRVAGKGSDADYYLNAYNNLKAAMGME* |
Ga0119954_100134024 | F015704 | N/A | MTFSTFPELLESCTDPSNGTIRWGTACQAAKDHGLWDDFRTDYGTTARFGPVDAGEFLSWLGY* |
Ga0119954_10013409 | F034907 | N/A | MITAILGGVILTTFSILFYLEDREGGGLYDPDPSASFRHRNRNK* |
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