Scaffold Ga0119954_1001221

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1001221
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8624
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F004233	Metagenome	447	Y
F005585	Metagenome / Metatranscriptome	395	Y
F013317	Metagenome / Metatranscriptome	272	Y
F014016	Metagenome / Metatranscriptome	266	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_100122110	F014016	GGA	MINKIALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVNADVA*
Ga0119954_100122111	F005585	GGA	MLVTPYSTGALSMATRGTIFTAFTKSREFSVFSSETHLNWHLLLLRQNSQEWWKVQSARIRISISLDTPLSWVDADFLHQKIGMTLSLTRNHNQNQYCDYCKSRWGQIKGEWHLKARTPAVWKVQSETPLRKAQVRFYCQPCADEVQNWPDGTFYSLKEQLEDAINNFAGKEKLNVELPR
Ga0119954_100122112	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHTLAESLVANCDVYIVKVELYRTEADANPWTTGLSSESKSKQYALELAETGALGRALNLAGFFAKPTGAPKKPIQTTKPELASFIKEQRPNDPEPIVWDVSAIAAELGAEVIDEIPLCKCGRGPMILKSGTKDGKEYRGYTCPSKDRADQCPARWMRIGSDGHWVFQK*
Ga0119954_100122113	F000545	N/A	MRTDAHPFICSSCKLVTPHIELNRYETSDIPEAPEEVWLIECQRCFMQRIIYPSDRVASKEDDIVRCDQCGNWKMKAGNCRVCRLAAGFEKQMVQYWNGNATMERPYDDANL*
Ga0119954_10012214	F004233	N/A	MTLWTPDWRIKVNGTELTSVTLSNLTITSGRQDINSPTPAGYCSLELINTDGTNYSFTINTSVTIEIKDTSGNYVALFGGRISDLRQIVRSAGSSAVITSLRITAIGALSKLQRAIFDGNLAQGLDGAQILDLLDDLLLNSWNEVPPAETWATYDATETWANAQNIGLGEIDAGEYTMVSRQITDSIIAPIANSIANSALGYLYEDANGLIGYADASHRQDYLIANGYTDLDASQAIASGIGVIQRQGDLANKIIMDYGNNFNSSYTAEDTTSQASFGLFAEQFNSYLKNAADVEDVADRLIQLRAYPRDTFQSITFALQSPEIDDTDRDALLNIFMGRPVRITNLPLNILGGEFTGFVEGWTFSASVSGLSITFLASPTEFSAFAQQWAQVNAAESWNSVLNTLEWQDAIGVIS*
Ga0119954_10012219	F013317	AGGA	LLIEKKKWDYLADIRARTGARTLYINATPKGIYQFDLGALIEPEWVLKSLPVTTDFSNKAHSERPCGFLDIRLAELLLV*