NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119954_1001221

Scaffold Ga0119954_1001221


Overview

Basic Information
Taxon OID3300014819 Open in IMG/M
Scaffold IDGa0119954_1001221 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8624
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F000645Metagenome / Metatranscriptome962Y
F004233Metagenome447Y
F005585Metagenome / Metatranscriptome395Y
F013317Metagenome / Metatranscriptome272Y
F014016Metagenome / Metatranscriptome266N

Sequences

Protein IDFamilyRBSSequence
Ga0119954_100122110F014016GGAMINKIALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVNADVA*
Ga0119954_100122111F005585GGAMLVTPYSTGALSMATRGTIFTAFTKSREFSVFSSETHLNWHLLLLRQNSQEWWKVQSARIRISISLDTPLSWVDADFLHQKIGMTLSLTRNHNQNQYCDYCKSRWGQIKGEWHLKARTPAVWKVQSETPLRKAQVRFYCQPCADEVQNWPDGTFYSLKEQLEDAINNFAGKEKLNVELPR
Ga0119954_100122112F000645GAGMSNYLDDYVSVQDRLKEFINAYPDYRIKTHTLAESLVANCDVYIVKVELYRTEADANPWTTGLSSESKSKQYALELAETGALGRALNLAGFFAKPTGAPKKPIQTTKPELASFIKEQRPNDPEPIVWDVSAIAAELGAEVIDEIPLCKCGRGPMILKSGTKDGKEYRGYTCPSKDRADQCPARWMRIGSDGHWVFQK*
Ga0119954_100122113F000545N/AMRTDAHPFICSSCKLVTPHIELNRYETSDIPEAPEEVWLIECQRCFMQRIIYPSDRVASKEDDIVRCDQCGNWKMKAGNCRVCRLAAGFEKQMVQYWNGNATMERPYDDANL*
Ga0119954_10012214F004233N/AMTLWTPDWRIKVNGTELTSVTLSNLTITSGRQDINSPTPAGYCSLELINTDGTNYSFTINTSVTIEIKDTSGNYVALFGGRISDLRQIVRSAGSSAVITSLRITAIGALSKLQRAIFDGNLAQGLDGAQILDLLDDLLLNSWNEVPPAETWATYDATETWANAQNIGLGEIDAGEYTMVSRQITDSIIAPIANSIANSALGYLYEDANGLIGYADASHRQDYLIANGYTDLDASQAIASGIGVIQRQGDLANKIIMDYGNNFNSSYTAEDTTSQASFGLFAEQFNSYLKNAADVEDVADRLIQLRAYPRDTFQSITFALQSPEIDDTDRDALLNIFMGRPVRITNLPLNILGGEFTGFVEGWTFSASVSGLSITFLASPTEFSAFAQQWAQVNAAESWNSVLNTLEWQDAIGVIS*
Ga0119954_10012219F013317AGGALLIEKKKWDYLADIRARTGARTLYINATPKGIYQFDLGALIEPEWVLKSLPVTTDFSNKAHSERPCGFLDIRLAELLLV*

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