Basic Information | |
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Taxon OID | 3300014819 Open in IMG/M |
Scaffold ID | Ga0119954_1001221 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8624 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000545 | Metagenome / Metatranscriptome | 1038 | Y |
F000645 | Metagenome / Metatranscriptome | 962 | Y |
F004233 | Metagenome | 447 | Y |
F005585 | Metagenome / Metatranscriptome | 395 | Y |
F013317 | Metagenome / Metatranscriptome | 272 | Y |
F014016 | Metagenome / Metatranscriptome | 266 | N |
Protein ID | Family | RBS | Sequence |
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Ga0119954_100122110 | F014016 | GGA | MINKIALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVNADVA* |
Ga0119954_100122111 | F005585 | GGA | MLVTPYSTGALSMATRGTIFTAFTKSREFSVFSSETHLNWHLLLLRQNSQEWWKVQSARIRISISLDTPLSWVDADFLHQKIGMTLSLTRNHNQNQYCDYCKSRWGQIKGEWHLKARTPAVWKVQSETPLRKAQVRFYCQPCADEVQNWPDGTFYSLKEQLEDAINNFAGKEKLNVELPR |
Ga0119954_100122112 | F000645 | GAG | MSNYLDDYVSVQDRLKEFINAYPDYRIKTHTLAESLVANCDVYIVKVELYRTEADANPWTTGLSSESKSKQYALELAETGALGRALNLAGFFAKPTGAPKKPIQTTKPELASFIKEQRPNDPEPIVWDVSAIAAELGAEVIDEIPLCKCGRGPMILKSGTKDGKEYRGYTCPSKDRADQCPARWMRIGSDGHWVFQK* |
Ga0119954_100122113 | F000545 | N/A | MRTDAHPFICSSCKLVTPHIELNRYETSDIPEAPEEVWLIECQRCFMQRIIYPSDRVASKEDDIVRCDQCGNWKMKAGNCRVCRLAAGFEKQMVQYWNGNATMERPYDDANL* |
Ga0119954_10012214 | F004233 | N/A | MTLWTPDWRIKVNGTELTSVTLSNLTITSGRQDINSPTPAGYCSLELINTDGTNYSFTINTSVTIEIKDTSGNYVALFGGRISDLRQIVRSAGSSAVITSLRITAIGALSKLQRAIFDGNLAQGLDGAQILDLLDDLLLNSWNEVPPAETWATYDATETWANAQNIGLGEIDAGEYTMVSRQITDSIIAPIANSIANSALGYLYEDANGLIGYADASHRQDYLIANGYTDLDASQAIASGIGVIQRQGDLANKIIMDYGNNFNSSYTAEDTTSQASFGLFAEQFNSYLKNAADVEDVADRLIQLRAYPRDTFQSITFALQSPEIDDTDRDALLNIFMGRPVRITNLPLNILGGEFTGFVEGWTFSASVSGLSITFLASPTEFSAFAQQWAQVNAAESWNSVLNTLEWQDAIGVIS* |
Ga0119954_10012219 | F013317 | AGGA | LLIEKKKWDYLADIRARTGARTLYINATPKGIYQFDLGALIEPEWVLKSLPVTTDFSNKAHSERPCGFLDIRLAELLLV* |
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