Scaffold Ga0119954_1001031

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1001031
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9454
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030347	Metagenome / Metatranscriptome	185	Y
F056052	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_10010311	F056052	GAG	MSCRSAILIDNFLSEEKFNIISTKVAATSHYTNNEFAETKDSLWEEIYTLVLDRLKEIGLYQEHFAESVKLFGYNQFRPANYGHGNFNGPHTDHGGYVFYVHPHWDENWEGQLKITHAEEEQYRTGIFAKPNRFIWMNPDTFHDVTTTFLDTTHARVANIAFLGGDIFVDPVGVNFINIFTTGNLVQE*
Ga0119954_10010316	F030347	GGAG	MNHRKHKQAENARRPKKEVYNPYANDPPDAKCPYCGQSGKICSYINSVSRGWGRTACKKKNEN*