Basic Information | |
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Taxon OID | 3300014819 Open in IMG/M |
Scaffold ID | Ga0119954_1000770 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11066 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (84.62%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000684 | Metagenome / Metatranscriptome | 938 | Y |
F001507 | Metagenome / Metatranscriptome | 681 | Y |
F005092 | Metagenome / Metatranscriptome | 412 | Y |
F015988 | Metagenome / Metatranscriptome | 250 | Y |
F034902 | Metagenome / Metatranscriptome | 173 | Y |
F049499 | Metagenome | 146 | Y |
F058095 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0119954_10007701 | F005092 | N/A | MDKLEYALRTIANCDLCYGKGYHGFANGEDYDIEDCECNPYGLILDDDGDVIFDNGLLSESELSIFATSEAN* |
Ga0119954_100077013 | F001507 | AGG | MSRLYTIDELVTEIYEDNLSHFEFMENMNGGDCDCALHNTMNTIVRYWES* |
Ga0119954_100077015 | F015988 | GAG | MESEYINRKTKLIEYTKLHLISIDQDSESISEQMESLDPASKDYSELDFEYNWLQGQRIATAHLLSVIEEML* |
Ga0119954_10007703 | F058095 | GAGG | MEYNYVLTTAYDGELFSTHRISDFTEASVAWNKISDHGNAKEYATYNLTDPTGKMFTKNFYADGRVTIK* |
Ga0119954_10007704 | F049499 | AGG | MDYRMVDVLNADQLEENDLIGIAESIVKIISITPTKEGFVLIHEDEYGEKDVLEIFDDEQFELFILE* |
Ga0119954_10007708 | F000684 | AGGA | MTLGGYTYQVGDLFTTSKTGITGRIEKFVPMRHNLTKVMLRLANNQTRFAMVKTY* |
Ga0119954_10007709 | F034902 | AGGA | MISTALAIQEATRDAVHDEEVMGMASAIFHHRHELDEEDFIKAMYMYSAHLSAMTATLVTHACLTESQINDMLETIKEMEAMGKDIE* |
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