Scaffold Ga0119954_1000770

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1000770
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11066
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F001507	Metagenome / Metatranscriptome	681	Y
F005092	Metagenome / Metatranscriptome	412	Y
F015988	Metagenome / Metatranscriptome	250	Y
F034902	Metagenome / Metatranscriptome	173	Y
F049499	Metagenome	146	Y
F058095	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_10007701	F005092	N/A	MDKLEYALRTIANCDLCYGKGYHGFANGEDYDIEDCECNPYGLILDDDGDVIFDNGLLSESELSIFATSEAN*
Ga0119954_100077013	F001507	AGG	MSRLYTIDELVTEIYEDNLSHFEFMENMNGGDCDCALHNTMNTIVRYWES*
Ga0119954_100077015	F015988	GAG	MESEYINRKTKLIEYTKLHLISIDQDSESISEQMESLDPASKDYSELDFEYNWLQGQRIATAHLLSVIEEML*
Ga0119954_10007703	F058095	GAGG	MEYNYVLTTAYDGELFSTHRISDFTEASVAWNKISDHGNAKEYATYNLTDPTGKMFTKNFYADGRVTIK*
Ga0119954_10007704	F049499	AGG	MDYRMVDVLNADQLEENDLIGIAESIVKIISITPTKEGFVLIHEDEYGEKDVLEIFDDEQFELFILE*
Ga0119954_10007708	F000684	AGGA	MTLGGYTYQVGDLFTTSKTGITGRIEKFVPMRHNLTKVMLRLANNQTRFAMVKTY*
Ga0119954_10007709	F034902	AGGA	MISTALAIQEATRDAVHDEEVMGMASAIFHHRHELDEEDFIKAMYMYSAHLSAMTATLVTHACLTESQINDMLETIKEMEAMGKDIE*