Scaffold Ga0134300_1014195

Overview

Basic Information

• Taxon OID: 3300014818
• Scaffold ID: Ga0134300_1014195
• Source Dataset Name: Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0152 : 8 days incubation
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Battelle Memorial Institute, Gulf Coast Restoration Organization
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2086
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities To Study Oil Droplet Degradation From Trondheimsfjord, Norway

Source Dataset Sampling Location

• Location Name: Norway: Trondheimsfjord
• Coordinates
  • Lat. (^o): 63.43
  • Long. (^o): 10.43
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034992	Metagenome	173	N
F046021	Metagenome / Metatranscriptome	152	Y
F072747	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134300_10141951	F046021	N/A	MKLKQSDMKKLTPKYNDNKSVRLKIDKLLKQNQSNVANSDTGSRNDIGGDDAVEWAWKKIQERIKELDPAFYEIIKSR*
Ga0134300_10141952	F072747	N/A	MPDEITLKSIQLLRDCDPNLDEMGSMDKFLSHQKELAKMRNQYVSYSNHPQADALRKRLDVFEESSQAFTFVYFTMMQYKRESLLAQANELEMANAVIELQNELNILTKVRED*
Ga0134300_10141954	F034992	N/A	WAYEHFTVLTFDETPTVEDVLEAFTDYMQVSPIDGVSLDPLNDLKAGEKQSKYDYYYDALSNIRRFIKKNKVAFYLVVHPGTAANRRRNDDGSRPAPNMSDVEFGSMFGNRADNFIVFHRNPQSENWNMTEIHIQKVKFQKLVGVPTPETRPIALFYHYATRRFRYLNENGSPIDPIALVDSKVKPSNVF*