Scaffold Ga0134300_1010231

Overview

Basic Information

• Taxon OID: 3300014818
• Scaffold ID: Ga0134300_1010231
• Source Dataset Name: Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0152 : 8 days incubation
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Battelle Memorial Institute, Gulf Coast Restoration Organization
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2866
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities To Study Oil Droplet Degradation From Trondheimsfjord, Norway

Source Dataset Sampling Location

• Location Name: Norway: Trondheimsfjord
• Coordinates
  • Lat. (^o): 63.43
  • Long. (^o): 10.43
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006146	Metagenome / Metatranscriptome	380	Y
F028833	Metagenome / Metatranscriptome	190	Y
F033079	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134300_10102313	F028833	GGAGG	MEDKRRIPRKVIPFLSDTVVDNIARKVAEEPVPQHIIDEERGDEIRQLRKEQAQMEMYDDPYMNWSGHR*
Ga0134300_10102314	F006146	AGGAG	MIITTGTLLIVQALIVSWIVFTRPEPCPRIYKTLQEEGGQLATYGDIHLYCEIDYGGKWKIKDEYPEK*
Ga0134300_10102315	F033079	N/A	MDEIAGNRLVWRHIQKENRKMMLDPLGYDSIVDIDEIHSRNRRKTDDPYIKATSAKMKHRFPKIDNAERR*