Scaffold Ga0119960_1028366

Overview

Basic Information

• Taxon OID: 3300014811
• Scaffold ID: Ga0119960_1028366
• Source Dataset Name: Aquatic viral communities from ballast water - Michigan State University - AB_ballast water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 793
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic → Aquatic Viral Communities From Harbor And Ballast Water - Michigan State University

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F038208	Metagenome	166	Y
F091314	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119960_10283661	F038208	N/A	MIDRIEEVQCMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEMVVAKRLGYDYEPGITWDKSKADVGQHIEVKWSANPTSNL*
Ga0119960_10283662	F000403	N/A	MSDYIEIIHPQSMTAKLLCNGVLVEEYKIEQCDKCSQLRRFDKFGFQKGYDRTDNIIWFCGECR*
Ga0119960_10283664	F091314	N/A	FPVTIQVEAEDVKDTAWTAETVPACSHGSMRWNQSKPDAPKAWAGYFCTEKAKENQCKPRWYVLISDGTFKPQV*