Scaffold Ga0119946_1001408

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119946_1001408

Scaffold Ga0119946_1001408

Overview

Basic Information
Taxon OID	3300014801 Open in IMG/M
Scaffold ID	Ga0119946_1001408 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from drinking water treatment system in Nanjing, China - Filtered water - FW
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Nanjing University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3306
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic → Aquatic Microbial Communities From Drinking Water Treatment System In Nanjing, China

Source Dataset Sampling Location
Location Name	China: Nanjing
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006105	Metagenome / Metatranscriptome	381	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119946_10014082	F006105	AGG	VIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNVSTDYTLLKSANLSSYTERYDKFSLAVGSLETGSYRYEVYDTNSTVAAAVAVVETGLAYVQVVSLTFNTYANTITYQPYAASAVRVFDSTFDQSFA*

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