Scaffold Ga0157377_10050480

Overview

Basic Information

• Taxon OID: 3300014745
• Scaffold ID: Ga0157377_10050480
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2343
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012235	Metagenome / Metatranscriptome	282	N
F029134	Metagenome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157377_100504802	F029134	GAG	MVHQTSDFYARALRVIGQDLARLMPENIAIELQGDSFIAHGLCAKNRMEDKDSSSPLCGVKKFITRIAGLIQPPSREPDLEFFPFTRTYKISDLEHLDETATDRRGNPEGMPDIYTLGERLRTIGKVIDGHNGRVIRIFKDLHQIVFEYQDGNGQSRKEELNNTQLYQLQQSYTAGRRSIDSGN*
Ga0157377_100504803	F012235	GAG	MADDFFKLKATDSGGYFAMALRVIGQDLAELFPQQVEVYYQNETFAVRVRCDRKRAERKTPAAAKSGLKNVIHKLATYRLDKAEDGADIAIFEHQYNSDEIGRLDRAGIHRRTQAGKVPDINNLGEALRTIGRIVDAQGGQLIRIFKDPRRVVFDYKDKQGTSHNKEMTRSELFKVQQSYYEKRSGSGGVDLWKGQDWRR*