Basic Information | |
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Taxon OID | 3300014745 Open in IMG/M |
Scaffold ID | Ga0157377_10050480 Open in IMG/M |
Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2343 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F012235 | Metagenome / Metatranscriptome | 282 | N |
F029134 | Metagenome | 189 | N |
Protein ID | Family | RBS | Sequence |
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Ga0157377_100504802 | F029134 | GAG | MVHQTSDFYARALRVIGQDLARLMPENIAIELQGDSFIAHGLCAKNRMEDKDSSSPLCGVKKFITRIAGLIQPPSREPDLEFFPFTRTYKISDLEHLDETATDRRGNPEGMPDIYTLGERLRTIGKVIDGHNGRVIRIFKDLHQIVFEYQDGNGQSRKEELNNTQLYQLQQSYTAGRRSIDSGN* |
Ga0157377_100504803 | F012235 | GAG | MADDFFKLKATDSGGYFAMALRVIGQDLAELFPQQVEVYYQNETFAVRVRCDRKRAERKTPAAAKSGLKNVIHKLATYRLDKAEDGADIAIFEHQYNSDEIGRLDRAGIHRRTQAGKVPDINNLGEALRTIGRIVDAQGGQLIRIFKDPRRVVFDYKDKQGTSHNKEMTRSELFKVQQSYYEKRSGSGGVDLWKGQDWRR* |
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