Scaffold Ga0134580_100001

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134580_100001

Scaffold Ga0134580_100001

Overview

Basic Information
Taxon OID	3300014741 Open in IMG/M
Scaffold ID	Ga0134580_100001 Open in IMG/M
Source Dataset Name	Human fecal microbial community from subjects in taly - 20007
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bologna
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	28875
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (81.82%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy

Source Dataset Sampling Location
Location Name	Italy
Coordinates	Lat. (^o)	44.4950537	Long. (^o)	11.3427401	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067720	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134580_1000013	F067720	AGGAGG	MASTTYDHFANPGKMYAAQEHFRHVTKMVCARLRGLTKTYHFPDVAKLVTFCHQFAVLGTMVRNAGQLPQPFWLGAACGGGSHSLSASVART*

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