Scaffold Ga0134314_100554

Overview

Basic Information

• Taxon OID: 3300014711
• Scaffold ID: Ga0134314_100554
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0111
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3470
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001915	Metagenome / Metatranscriptome	617	Y
F019121	Metagenome	231	Y
F027490	Metagenome / Metatranscriptome	194	Y
F098944	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134314_1005541	F019121	AGG	MAYTLKRSINGLSFEDIKRIYDNNPNMTLRELSNLTGFAIPFLKKILLDQ*
Ga0134314_1005543	F001915	AGGA	MEWTLAHPLHDVDDIVDMADSVFGTEADGILTRDRAVFRKHVTVATTVQLFDKSKEFIAVCHEDDKLLGYCWFDRGGYTTYANEEISNAKFHHVDLQLPTRLRVRLINAMIDQHILWAHQWGIPVVCSTSIRAEHDGFMKIHKKRGFTVNGSYAWIRTEKGMECLTK*
Ga0134314_1005544	F098944	AGG	MFDEIRPEGSTVSSEAIKQKAREYAKAKRAEKKAMKLATGKIEPKEIETVPVKDEFDMTNFTPRSQKQPGRPKSIVNKVTEYGALFNRLNDERTSKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHVQNVTREDEGDADDALNEFLDSLRKV*
Ga0134314_1005547	F027490	GAGG	MYGRVINGGAQMRKGVSKGINDKLAGHSGENDRRAKVAGAVRNAYTVNTVSSQHTNNSDKGKFTKPSNRSKDYAL*