Scaffold Ga0134314_100550

Overview

Basic Information

• Taxon OID: 3300014711
• Scaffold ID: Ga0134314_100550
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0111
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3483
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F025283	Metagenome / Metatranscriptome	202	Y
F027490	Metagenome / Metatranscriptome	194	Y
F041182	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134314_1005501	F041182	N/A	RAAKGLPPLKTAMEVLIEAMQSEELDFRDKARIADKLAAYESSRAPVISIEHVQNMVKDEDVDAEEALDDFLESLRKV*
Ga0134314_1005504	F027490	GAGG	MSYGKVINGGAQMRKGLTKGVNNKLSTRSSEDSRRQSVATAVNNAYKVDTLSSQHTNNVRGGKFQKPSVPKNI*
Ga0134314_1005505	F001059	AGG	MATYDIESLKADLPTAKELSQFVYDRTQIALDLIGKPKEDQYVVAKAALEGKKIPSEFLTDENPYVDRKELVPEDPIPSLPPRSEDLPSPDSQVHFFGATNMPHPLDPQSDRKVHISFKKYENGVITYQVMGPLEKQAVGSRINKYGQNVPEKYTWMDPRTEERLMRNADGTFTAQGRGLYAYCVGEKGGGIWPLIDKEIVAIAEKNIANPWA*
Ga0134314_1005508	F025283	AGGA	MLDKQNIVVESLESPPGNKGIEYQIAHEVYLKMVDYLRLTQAKNTLNRMSDYHY