Scaffold Ga0135354_102124

Overview

Basic Information

• Taxon OID: 3300014706
• Scaffold ID: Ga0135354_102124
• Source Dataset Name: Human colon tissue microbial communities from Howard University Cancer Center, USA - CC0995
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: HiThru Analytics LLC
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2923
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Unclassified → Human Colon Tissue → Human Fecal And Colon Tissue Microbial Communities From Howard University Cancer Center, Usa

Source Dataset Sampling Location

• Location Name: USA: Washington, D.C
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074964	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0135354_1021245	F074964	N/A	MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKSICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNADKEKGVEAKTADWCAENVVYGSEYKSFGFTTAESLETQKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*