NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181519_10131371

Scaffold Ga0181519_10131371


Overview

Basic Information
Taxon OID3300014658 Open in IMG/M
Scaffold IDGa0181519_10131371 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1605
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057521Metagenome / Metatranscriptome136Y
F080763Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0181519_101313711F080763GGAGMGARHGAQSSAVWTSDSAVVLLDGIEANEHGKGLAEARLRALHPLPEGKDHHSTDFEKRLRKIFEKQSGDRVQPWLAPEFWQQEIDNVLVQGIFGRSGSKSGAIDRIHAVWPEISATWLRDRMEEVARAGLPRWVQTEFWATEVDPILLVGVDRATRFRREAVDKALRACPGLQIGAVWRRLRVLRNRRNGEAEAVSFADSPVKLSGVARGAGSTEEEMPTSAGWSNDRRVWQSVDPILLEGIRTANQCEREAVDKALRPFSELRTAAIWARLRRLRYK
Ga0181519_101313712F057521N/AVSFEGFSSVSRHAKETVRRLRTYLRGRRAVDVESLVAEARILTTSEWNAALPEQRNNGKIVYLEPSSLERRSDTREDPFETVYGWELLSRLEARLPPEQVPYLNAFLAGDKPQDVARRLGISAKAASARMRRFKAKVTDLYAALDGL
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