Scaffold Ga0181519_10015338

Overview

Basic Information

• Taxon OID: 3300014658
• Scaffold ID: Ga0181519_10015338
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5553
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F025900	Metagenome	199	N
F044872	Metagenome	153	N
F062380	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181519_1001533810	F044872	GGAGG	MNTGLLNSFASMVKGSILVTDAIKAAFSKFEGGIPSDDQVLVAISEVVFTVTLNKDARQVLSFYLIQLYANHLFISDPSSEFGVCMRIARREIDTLLSFSVLDRIAKYVWEHREQFLMLWTVYAENSAAHPESTSDILGATLTESIQLLEAA*
Ga0181519_100153383	F005296	N/A	LWLLPSYEAGFWSALIAGKLRDRGKTRELLVYGRPARTCLPILDERLRKAAGTPTKSQALVARWITTGLRWLANTRAMEYAILLGLKRVWPKGQTICTEVKLCL*
Ga0181519_100153386	F025900	N/A	MSFCTLDLKLQLQEKCVPVSRTRTPKKNRNNLAPKSKEAQRKIRRWSFVVEVTVGDTTKTFQPPALTIGNLGSARAAAETIRADIASLDQFKDAKVVVKPKAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKLDTVGCPCHEIEDEAARQVEFDRHVTERLGKYVMEEQQAMRRQQMIDAGIDPDQVLNNQLPAEQVPAEFQAAPAVEEAPAERVNTDPFTDGEFGKEAA*
Ga0181519_100153389	F062380	GAGG	MPSDFNDFECNDFEKLLFADPGSTGTCKLIIAYHPGFPLALGRIECASGLPIDVRVNVLESTPVLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPKGVDQSGV*