Scaffold Ga0181525_10020325

Overview

Basic Information

• Taxon OID: 3300014654
• Scaffold ID: Ga0181525_10020325
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4131
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009718	Metagenome / Metatranscriptome	314	Y
F038327	Metagenome / Metatranscriptome	166	Y
F055982	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181525_100203251	F009718	AGG	LAVRGSFLAGAPFTGPVILIGELALSVNDSGDGVINGHIAGSENGTILTFAEEPVTGSYSVDANCKGTLTVTPKGESVLNFSFVIVDSGEEMLAIETDPDTVVSGTLVKGN*
Ga0181525_100203252	F038327	AGGAG	MRRSRFISSTPLIAGLLTGLLFAIQVVPLNAADSDSWYDVSKEVTLTGTVSSVLHQPAPGMTWGSHLMVETVSGRLDASLGRFGLEGKGALSVTPGQQIELTGFMKTVRDKEVFVVRSVKANGITYTMRNEHGIEVSPLARERAAEKGVTL*
Ga0181525_100203254	F055982	GAG	MGHRDIKTAMHYQHPEVETARAALDYRPPTTDAAA*