NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181536_10155573

Scaffold Ga0181536_10155573


Overview

Basic Information
Taxon OID3300014638 Open in IMG/M
Scaffold IDGa0181536_10155573 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1195
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005112Metagenome / Metatranscriptome411Y
F075582Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0181536_101555731F075582GGAMEYAKFTLKKGLPTNQRPRALAVENEPHSADDFNGVIEGDYGKGEKRLIYSGTGVIRVRGSCQFGKINVHKHEAEKAGFYYDFVAEGVDPHTESFEVNIANGVLKGRYAFRQAFEQNRYLVVRMKDESVLVAKPDIHLKPPEFLETLSNSTRPVTIEWKDDGSLANVAIDNLRAVYRSHRPEGESYYDKLPAIEDLRNHSPAWLARKLFPGPEQEGTV
Ga0181536_101555732F005112N/AWAALMAALLGLAFWKNSRSYPLKSPLWRLGKAVIDTGLVVLMVIWLTSPFKNKIIQVSPAFVSVLAITHLAGVVFEAVAVLGVFAVDLLTGQVVARMDKRERNKLAKAA*
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