NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181536_10023023

Scaffold Ga0181536_10023023


Overview

Basic Information
Taxon OID3300014638 Open in IMG/M
Scaffold IDGa0181536_10023023 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4947
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005865Metagenome388Y
F009563Metagenome / Metatranscriptome316Y
F028588Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0181536_100230231F028588AGAAGMSTPTRANAESSKNIFDRFGTVLVPFISMGQLRFSEAGAGCRDDLPMEDGINPDTKKQSQPFRWLHEIDQILVVGMKYGPKGTQEAVKRVRQLTPELVPAQVWRRMRHLREKERGKSATPVDWSEAAIEILRNGYRSGGRKKAEAIKTVRDLYPGLAGYVVSRFARSQGWLDGEQESKRKDDRRPWTREEEQQLFVRAGYEPVKAIAQKLKRSEQSVRFRLKGRAISARVTDGWSLRRIQQTLHISHRRLQRLIGSGVLRVRDPR
Ga0181536_100230232F005865GAGGMPAPEPGPEWVLSGANPRSGSAAESELLKAARSAWPKALAHVRQVQSQTPFDDDEILVAEVWESVLQSVSGTLDRMNGRRREIEDLEAYLLGSFYHRLRRALKKEQRRQEMIHLVSSAQELEVLGKTSHDVEDTLHAQEILDRMDEWSRKVWVAREYGYTWKHIGRVLGIPSDSVMLRFRRRMKILRARLSGGR*
Ga0181536_100230233F009563AGGMLVATAAVLLFAVGGWLWVRARRSVEATDVAVLDLRERSVARGQRQSETDQTPLAISRTTKHLVLDLPIGSKEGPYDVGLLTGTGDQILRSTGMAQLHDHITDLRVDVDLSSVQAGAYSLGVRQGGLDWTRYPIRVF*
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Institute for Fundamental Biomedical Research
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