Scaffold Ga0181536_10017365

Overview

Basic Information

• Taxon OID: 3300014638
• Scaffold ID: Ga0181536_10017365
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6071
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061612	Metagenome / Metatranscriptome	131	Y
F074512	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181536_1001736510	F074512	GAG	VTDLLHVAALVGATLLVARAAIFGPLQRLYPPLFRCCQCTGWWVGALAGGSAVVPLGHGRLVDAGLVGAATSFLALLADALLLQLLGNPDEEEKTT*
Ga0181536_100173657	F061612	GGAGG	MADTKREVHRETMCCGYKRCPEVVVFDDGSAEITDDDPAIGSVGTIKLRPEVAQRLAALLTTRVG*