Scaffold Ga0134370_101565

Overview

Basic Information

• Taxon OID: 3300014536
• Scaffold ID: Ga0134370_101565
• Source Dataset Name: Human fecal microbial communities from obese patients in Germany - AS58_12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hohenheim
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5985
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location

• Location Name: Germany
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134370_1015652	F044555	N/A	MKTTNPSSRITLSQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGSLPTVPDLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHYKR*
Ga0134370_1015658	F060985	GGA	MSNIDEKAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSGFSHIGYGEYHIIRGNRGLKTPIDRINREDYIFGYWFPTYKKYIPYRIRILKLALKDLERIKEEYGKD*
Ga0134370_1015659	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSQGNYKGSSMNFDAMVLLGFTWFKLLGVALMMLLWPLVFIYALNDGIERYPFKKYAIPYIFILVVWFIVFLYGLVS*